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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3f03FMNPentaerythritol tetranitrate reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3f03FMNPentaerythritol tetranitrate reductase/1.000
3p84FMNPentaerythritol tetranitrate reductase/0.776
3p8jFMNPentaerythritol tetranitrate reductase/0.773
1h63FMNPentaerythritol tetranitrate reductase/0.677
3p74FMNPentaerythritol tetranitrate reductase/0.646
2abbFMNPentaerythritol tetranitrate reductase/0.629
1h50FMNPentaerythritol tetranitrate reductase/0.610
3p62FMNPentaerythritol tetranitrate reductase/0.600
1vyrFMNPentaerythritol tetranitrate reductase/0.593
3p82FMNPentaerythritol tetranitrate reductase/0.591
3p67FMNPentaerythritol tetranitrate reductase/0.565
1h51FMNPentaerythritol tetranitrate reductase/0.545
3p8iFMNPentaerythritol tetranitrate reductase/0.544
1icqFMN12-oxophytodienoate reductase 11.3.1.420.543
4jicFMNGTN Reductase/0.540
1icpFMN12-oxophytodienoate reductase 11.3.1.420.537
1icsFMN12-oxophytodienoate reductase 11.3.1.420.534
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.530
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.530
4tmbFMNOld yellow enzyme/0.519
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.514
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.505
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.503
1q45FMN12-oxophytodienoate reductase 31.3.1.420.495
3atzFMNProstaglandin F2a synthase/0.493
4e2dFMNDehydrogenase/0.492
4e2bFMNDehydrogenase/0.490
3gkaFMNN-ethylmaleimide reductase/0.489
1bwlFMNNADPH dehydrogenase 11.6.99.10.488
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.477
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.475
3atyFMNProstaglandin F2a synthase/0.470
4df2FMNNADPH dehydrogenase/0.470
3tjlFMNNADPH dehydrogenase/0.469
4rnuFMNNADPH dehydrogenase 11.6.99.10.467
1oycFMNNADPH dehydrogenase 11.6.99.10.457
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.453
4m5pFMNNADPH dehydrogenase/0.453
4h6kFMNNADPH dehydrogenase 11.6.99.10.452
4rnwFMNNADPH dehydrogenase 11.6.99.10.448
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1oyaFMNNADPH dehydrogenase 11.6.99.10.443
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.441