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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3eldSFGMethyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3eldSFGMethyltransferase/1.000
3eluSAMMethyltransferase/0.777
4ctjSAMGenome polyprotein/0.629
2pxaSAHGenome polyprotein2.7.7.480.608
4k6mSAHGenome polyprotein/0.606
3p8z36AGenome polyprotein2.1.1.560.577
2p41SAHGenome polyprotein/0.569
3p8zSAHGenome polyprotein2.1.1.560.566
2xbmSAHGenome polyprotein/0.565
3p97SAMGenome polyprotein2.1.1.560.565
5jjrSAHGenome polyprotein/0.563
3elySAHMethyltransferase/0.543
5jjsSAHGenome polyprotein/0.543
4ctkSAMGenome polyprotein/0.540
2wa2SAMGenome polyprotein/0.523
3evcSAHGenome polyprotein2.1.1.560.522
2px5SAHGenome polyprotein2.7.7.480.515
3evgSAHGenome polyprotein2.1.1.560.511
2px2SAHGenome polyprotein2.7.7.480.500
2oxtSAMGenome polyprotein/0.496
1xddAAYIntegrin alpha-L/0.444
1xe55FEPlasmepsin-23.4.23.390.440