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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dyaPZLGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dyaPZLGag-Pol polyprotein2.7.7.491.000
4h4o506Gag-Pol polyprotein2.7.7.490.656
3ffi3OBGag-Pol polyprotein2.7.7.490.654
4h4m494Gag-Pol polyprotein2.7.7.490.643
3c6tM14Gag-Pol polyprotein2.7.7.490.626
3drpR8EGag-Pol polyprotein2.7.7.490.624
3c6uM22Gag-Pol polyprotein2.7.7.490.617
3dokGWJPol protein/0.616
4rw4494Gag-Pol polyprotein2.7.7.490.616
3lakKR1Gag-Pol polyprotein2.7.7.490.611
3t195MAGag-Pol polyprotein2.7.7.490.605
3t1a5MAGag-Pol polyprotein2.7.7.490.605
2ynhEURGag-Pol polyprotein2.7.7.490.604
3tamM06Gag-Pol polyprotein2.7.7.490.600
2be2R22Gag-Pol polyprotein2.7.7.490.598
4rw6494Gag-Pol polyprotein2.7.7.490.598
4mfb29TGag-Pol polyprotein2.7.7.490.596
3drrR8EGag-Pol polyprotein2.7.7.490.593
3dlgGWEGag-Pol polyprotein2.7.7.490.580
3lalKRVGag-Pol polyprotein2.7.7.490.577
4lsl1YQGag-Pol polyprotein2.7.7.490.575
3dolGWIPol protein/0.565
2wonZZEGag-Pol polyprotein2.7.7.490.563
3e01PZ2Gag-Pol polyprotein2.7.7.490.553
3dmjGWEPol protein/0.552
3dleGFAGag-Pol polyprotein2.7.7.490.544
2b5j3ACGag-Pol polyprotein2.7.7.490.539
2ynfWHUGag-Pol polyprotein2.7.7.490.536
1c1bGCAGag-Pol polyprotein2.7.7.490.526
1jlaTNKGag-Pol polyprotein2.7.7.490.519
3di6PDZGag-Pol polyprotein2.7.7.490.519
1rt1MKCGag-Pol polyprotein2.7.7.490.517
1ep4S11Gag-Pol polyprotein2.7.7.490.507
3lanKBTGag-Pol polyprotein2.7.7.490.507
1rtiHEFGag-Pol polyprotein2.7.7.490.501
4i7fNVEGag-Pol polyprotein2.7.7.490.488
3lamKRPGag-Pol polyprotein2.7.7.490.484
1c1c612Gag-Pol polyprotein2.7.7.490.483
1rt2TNKGag-Pol polyprotein2.7.7.490.482
3nbpJGZGag-Pol polyprotein2.7.7.490.481
1klmSPPGag-Pol polyprotein2.7.7.490.474
1s1vTNKGag-Pol polyprotein2.7.7.490.471
4i2pG73Gag-Pol polyprotein2.7.7.490.467
3i0rRT3Gag-Pol polyprotein2.7.7.490.466
2jleI15Reverse transcriptase/RNaseH/0.454
2rkiTT1Gag-Pol polyprotein2.7.7.490.454
3qlhT27Gag-Pol polyprotein2.7.7.490.451