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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dvlATPCircadian clock protein kinase KaiC2.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dvlATPCircadian clock protein kinase KaiC2.7.11.11.000
2gblATPCircadian clock protein kinase KaiC2.7.11.10.541
3jzmATPCircadian clock protein kinase KaiC2.7.11.10.531
4o0mATPCircadian clock protein kinase KaiC2.7.11.10.530
3s1aATPCircadian clock protein kinase KaiC2.7.11.10.528
1tf7ATPCircadian clock protein kinase KaiC2.7.11.10.523
3k0fATPCircadian clock protein kinase KaiC2.7.11.10.517
1u9iATPCircadian clock protein kinase KaiC2.7.11.10.511
4tlbAGSCircadian clock protein kinase KaiC2.7.11.10.499
4tlcAGSCircadian clock protein kinase KaiC2.7.11.10.492
4tl9AGSCircadian clock protein kinase KaiC2.7.11.10.461
4tl7ATPCircadian clock protein kinase KaiC2.7.11.10.457
4tldAGSCircadian clock protein kinase KaiC2.7.11.10.449
3k0aATPCircadian clock protein kinase KaiC2.7.11.10.445
4tleAGSCircadian clock protein kinase KaiC2.7.11.10.443
2dr3ADPUPF0273 protein PH0284/0.441
4tl8AGSCircadian clock protein kinase KaiC2.7.11.10.440