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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3drrR8EGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3drrR8EGag-Pol polyprotein2.7.7.491.000
3c6tM14Gag-Pol polyprotein2.7.7.490.603
4h4m494Gag-Pol polyprotein2.7.7.490.586
3dyaPZLGag-Pol polyprotein2.7.7.490.585
3drpR8EGag-Pol polyprotein2.7.7.490.584
3c6uM22Gag-Pol polyprotein2.7.7.490.575
4rw6494Gag-Pol polyprotein2.7.7.490.569
2wonZZEGag-Pol polyprotein2.7.7.490.567
3dmjGWEPol protein/0.558
4h4o506Gag-Pol polyprotein2.7.7.490.555
4rw4494Gag-Pol polyprotein2.7.7.490.553
3dlgGWEGag-Pol polyprotein2.7.7.490.547
3t195MAGag-Pol polyprotein2.7.7.490.544
3lakKR1Gag-Pol polyprotein2.7.7.490.542
3ffi3OBGag-Pol polyprotein2.7.7.490.537
2be2R22Gag-Pol polyprotein2.7.7.490.531
2ynfWHUGag-Pol polyprotein2.7.7.490.529
3dokGWJPol protein/0.529
3e01PZ2Gag-Pol polyprotein2.7.7.490.529
4mfb29TGag-Pol polyprotein2.7.7.490.518
3t1a5MAGag-Pol polyprotein2.7.7.490.510
1jlaTNKGag-Pol polyprotein2.7.7.490.508
3tamM06Gag-Pol polyprotein2.7.7.490.507
1rt2TNKGag-Pol polyprotein2.7.7.490.503
3lanKBTGag-Pol polyprotein2.7.7.490.501
3dolGWIPol protein/0.499
3dleGFAGag-Pol polyprotein2.7.7.490.498
4i7fNVEGag-Pol polyprotein2.7.7.490.497
2b5j3ACGag-Pol polyprotein2.7.7.490.496
2ynhEURGag-Pol polyprotein2.7.7.490.489
1rtiHEFGag-Pol polyprotein2.7.7.490.485
3i0rRT3Gag-Pol polyprotein2.7.7.490.482
3di6PDZGag-Pol polyprotein2.7.7.490.478
3nbpJGZGag-Pol polyprotein2.7.7.490.476
2jleI15Reverse transcriptase/RNaseH/0.474
3lalKRVGag-Pol polyprotein2.7.7.490.474
1ep4S11Gag-Pol polyprotein2.7.7.490.472
3lamKRPGag-Pol polyprotein2.7.7.490.471
1c1bGCAGag-Pol polyprotein2.7.7.490.466
1rt1MKCGag-Pol polyprotein2.7.7.490.459
3i0sRT7Gag-Pol polyprotein2.7.7.490.458
1klmSPPGag-Pol polyprotein2.7.7.490.456
1c1c612Gag-Pol polyprotein2.7.7.490.453
3qlhT27Gag-Pol polyprotein2.7.7.490.451
2ic3HBYGag-Pol polyprotein2.7.7.490.445
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.443
3m8qDJZGag-Pol polyprotein2.7.7.490.442
1s1vTNKGag-Pol polyprotein2.7.7.490.441