Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3drpR8EGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3drpR8EGag-Pol polyprotein2.7.7.491.000
3c6uM22Gag-Pol polyprotein2.7.7.490.663
3t1a5MAGag-Pol polyprotein2.7.7.490.642
3lakKR1Gag-Pol polyprotein2.7.7.490.626
3dyaPZLGag-Pol polyprotein2.7.7.490.624
3tamM06Gag-Pol polyprotein2.7.7.490.622
3t195MAGag-Pol polyprotein2.7.7.490.615
4h4o506Gag-Pol polyprotein2.7.7.490.605
3drrR8EGag-Pol polyprotein2.7.7.490.590
4h4m494Gag-Pol polyprotein2.7.7.490.585
2be2R22Gag-Pol polyprotein2.7.7.490.584
4rw4494Gag-Pol polyprotein2.7.7.490.583
2ynfWHUGag-Pol polyprotein2.7.7.490.577
4rw6494Gag-Pol polyprotein2.7.7.490.572
4mfb29TGag-Pol polyprotein2.7.7.490.568
3dokGWJPol protein/0.557
3ffi3OBGag-Pol polyprotein2.7.7.490.555
3e01PZ2Gag-Pol polyprotein2.7.7.490.554
2wonZZEGag-Pol polyprotein2.7.7.490.552
3c6tM14Gag-Pol polyprotein2.7.7.490.552
3dlgGWEGag-Pol polyprotein2.7.7.490.536
2ynhEURGag-Pol polyprotein2.7.7.490.535
2b5j3ACGag-Pol polyprotein2.7.7.490.532
3dmjGWEPol protein/0.530
3dleGFAGag-Pol polyprotein2.7.7.490.502
3dolGWIPol protein/0.502
2jleI15Reverse transcriptase/RNaseH/0.496
1jlaTNKGag-Pol polyprotein2.7.7.490.486
1c1bGCAGag-Pol polyprotein2.7.7.490.482
1rtiHEFGag-Pol polyprotein2.7.7.490.477
3i0rRT3Gag-Pol polyprotein2.7.7.490.474
3di6PDZGag-Pol polyprotein2.7.7.490.470
3lamKRPGag-Pol polyprotein2.7.7.490.466
1ep4S11Gag-Pol polyprotein2.7.7.490.464
1rt2TNKGag-Pol polyprotein2.7.7.490.463
4i7fNVEGag-Pol polyprotein2.7.7.490.461
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.457
1rt1MKCGag-Pol polyprotein2.7.7.490.451
3nbpJGZGag-Pol polyprotein2.7.7.490.451
1s1vTNKGag-Pol polyprotein2.7.7.490.450
2rkiTT1Gag-Pol polyprotein2.7.7.490.449
1klmSPPGag-Pol polyprotein2.7.7.490.448