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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dokGWJPol protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dokGWJPol protein/1.000
3t1a5MAGag-Pol polyprotein2.7.7.490.591
4h4m494Gag-Pol polyprotein2.7.7.490.590
3dyaPZLGag-Pol polyprotein2.7.7.490.586
4rw6494Gag-Pol polyprotein2.7.7.490.582
3c6tM14Gag-Pol polyprotein2.7.7.490.577
3c6uM22Gag-Pol polyprotein2.7.7.490.577
4rw4494Gag-Pol polyprotein2.7.7.490.577
4h4o506Gag-Pol polyprotein2.7.7.490.559
4mfb29TGag-Pol polyprotein2.7.7.490.553
3t195MAGag-Pol polyprotein2.7.7.490.552
3lakKR1Gag-Pol polyprotein2.7.7.490.549
4lsl1YQGag-Pol polyprotein2.7.7.490.547
2ynhEURGag-Pol polyprotein2.7.7.490.533
3lalKRVGag-Pol polyprotein2.7.7.490.533
2wonZZEGag-Pol polyprotein2.7.7.490.532
2be2R22Gag-Pol polyprotein2.7.7.490.531
3drpR8EGag-Pol polyprotein2.7.7.490.528
3dlgGWEGag-Pol polyprotein2.7.7.490.527
3dmjGWEPol protein/0.517
3tamM06Gag-Pol polyprotein2.7.7.490.508
3drrR8EGag-Pol polyprotein2.7.7.490.505
2ynfWHUGag-Pol polyprotein2.7.7.490.498
3dleGFAGag-Pol polyprotein2.7.7.490.497
1rt1MKCGag-Pol polyprotein2.7.7.490.487
3dolGWIPol protein/0.486
3e01PZ2Gag-Pol polyprotein2.7.7.490.482
1c1c612Gag-Pol polyprotein2.7.7.490.481
1rt2TNKGag-Pol polyprotein2.7.7.490.479
4i7fNVEGag-Pol polyprotein2.7.7.490.479
1ep4S11Gag-Pol polyprotein2.7.7.490.478
1jlaTNKGag-Pol polyprotein2.7.7.490.475
2b5j3ACGag-Pol polyprotein2.7.7.490.475
1c1bGCAGag-Pol polyprotein2.7.7.490.471
3i0rRT3Gag-Pol polyprotein2.7.7.490.470
2jleI15Reverse transcriptase/RNaseH/0.461
2ze2T27Gag-Pol polyprotein2.7.7.490.452
3lamKRPGag-Pol polyprotein2.7.7.490.451
1rtiHEFGag-Pol polyprotein2.7.7.490.450
3di6PDZGag-Pol polyprotein2.7.7.490.448
1klmSPPGag-Pol polyprotein2.7.7.490.446