scPDB - Distribution of Binding site Similarity values of 3dmh entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3dmh	SAM	Probable ribosomal RNA small subunit methyltransferase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3dmh	SAM	Probable ribosomal RNA small subunit methyltransferase	/	1.000
3dmg	SAH	Probable ribosomal RNA small subunit methyltransferase	/	0.671
2zwv	SAH	Probable ribosomal RNA small subunit methyltransferase	/	0.615
2zul	SAM	Probable ribosomal RNA small subunit methyltransferase	/	0.604
3tm5	SFG	Uncharacterized protein	/	0.454