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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dl0AP5Adenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dl0AP5Adenylate kinase/1.000
4jl5ADPAdenylate kinase/0.528
4mkfAP5Adenylate kinase/0.519
1zioAP5Adenylate kinase/0.517
4jloADPAdenylate kinase/0.507
2eu8AP5Adenylate kinase/0.495
4w5jAP5Adenylate kinase/0.491
4jl6ADPAdenylate kinase/0.489
4ikeADPAdenylate kinase/0.484
2qajAP5Adenylate kinase/0.478
2oo7AP5Adenylate kinase/0.477
4jkyADPAdenylate kinase/0.470
4jldADPAdenylate kinase/0.460
4mkgAP5Adenylate kinase/0.457
1e4yAP5Adenylate kinase/0.456
1dvrATFAdenylate kinase/0.454
4qbiAP5Adenylate kinase/0.454
3dkvAP5Adenylate kinase/0.449
2osbAP5Adenylate kinase/0.447
4qbhAP5Adenylate kinase/0.446