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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dawATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dawATPActin, alpha skeletal muscle/1.000
4jhdANPActin-5C/0.624
3tu5ATPActin, alpha skeletal muscle/0.597
1s22ATPActin, alpha skeletal muscle/0.590
1t44ATPActin, alpha skeletal muscle/0.584
3mn6ATPActin-5C/0.582
1eqyATPActin, alpha skeletal muscle/0.581
3u9dATPActin, alpha skeletal muscle/0.575
4k41ATPActin, alpha skeletal muscle/0.567
5ce3ATPActin/0.566
1rgiATPActin, alpha skeletal muscle/0.565
3el2ATPActin-5C/0.565
4k42ADPActin, alpha skeletal muscle/0.564
4pl8ATPActin, alpha skeletal muscle/0.561
3mn9ATPActin-5C/0.558
1h1vATPActin, alpha skeletal muscle/0.557
1lotATPActin, alpha skeletal muscle/0.555
3mn7ATPActin-5C/0.555
1qz5ATPActin, alpha skeletal muscle/0.551
4pkgATPActin, alpha skeletal muscle/0.550
3ffkATPActin, alpha skeletal muscle/0.547
2q36ATPActin, alpha skeletal muscle/0.546
3a5mATPMajor actin/0.545
2p9kATPActin-related protein 2/0.542
4k43ADPActin, alpha skeletal muscle/0.540
1nm1ATPMajor actin/0.538
3u4lATPActin, cytoplasmic 1/0.538
4cbxATPActin-2/0.537
3m6gATPActin, alpha skeletal muscle/0.535
1nmdATPMajor actin/0.531
2v51ATPActin, alpha skeletal muscle/0.531
1yxqATPActin, alpha skeletal muscle/0.530
1c0fATPMajor actin/0.529
1ijjATPActin, alpha skeletal muscle/0.529
3eksATPActin-5C/0.529
4ci6ATPActin/0.526
4m63ATPActin-5C/0.513
4pkhADPActin, alpha skeletal muscle/0.513
4rwtANPActin-5C/0.512
2q97ATPActin, alpha skeletal muscle/0.510
4pkiATPActin, alpha skeletal muscle/0.510
2oanATPActin, cytoplasmic 1/0.501
1kxpATPActin, alpha skeletal muscle/0.483
1mduATPActin, alpha skeletal muscle/0.482
3a5oATPMajor actin/0.476
1dejATPMajor actin/0.467
1nlvATPMajor actin/0.460
3m1fATPActin, alpha skeletal muscle/0.451
3w3dATPActin, gamma-enteric smooth muscle/0.443