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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3d5m4MSGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3d5m4MSGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.627
3h2lYAKGenome polyprotein2.7.7.480.617
3u4r08FGenome polyprotein2.7.7.480.595
3igvB80Genome polyprotein2.7.7.480.593
2giqNN2Genome polyprotein2.7.7.480.575
3g86T18Genome polyprotein2.7.7.480.562
3tyvHI3Genome polyprotein2.7.7.480.562
3d28B34Genome polyprotein2.7.7.480.556
3hkwIX6Genome polyprotein2.7.7.480.544
4mk928RGenome polyprotein2.7.7.480.542
3bsc2PDGenome polyprotein2.7.7.480.541
3csoXNIGenome polyprotein2.7.7.480.533
3gynB42Genome polyprotein2.7.7.480.533
4mka2AYGenome polyprotein2.7.7.480.532
3hkyIX6Genome polyprotein2.7.7.480.530
3uph0C1Genome polyprotein2.7.7.480.527
4eaw0NQGenome polyprotein2.7.7.480.518
3br9DEYGenome polyprotein2.7.7.480.508
4mkb28VGenome polyprotein2.7.7.480.504
3u4o08EGenome polyprotein2.7.7.480.490
3gnvXNZGenome polyprotein2.7.7.480.488
3ska053Genome polyprotein2.7.7.480.480
2yoj8Y6Genome polyprotein2.7.7.480.461
3ske054Genome polyprotein2.7.7.480.457
2gc8885Polyprotein/0.444