Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3d4sTIMBeta-2 adrenergic receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3d4sTIMBeta-2 adrenergic receptor/1.000
3ny9JSZBeta-2 adrenergic receptor/0.664
2rh1CAUBeta-2 adrenergic receptor/0.642
5d6lCAUBeta-2 adrenergic receptor/0.634
5jqhCAUBeta-2 adrenergic receptor/0.623
5d5bCAUBeta-2 adrenergic receptor/0.621
3nyaJTZBeta-2 adrenergic receptor/0.620
3ny8JRZBeta-2 adrenergic receptor/0.607
5d5aCAUBeta-2 adrenergic receptor/0.583
4amjCVDBeta-1 adrenergic receptor/0.573
2ycxP32Beta-1 adrenergic receptor/0.572
2yczI32Beta-1 adrenergic receptor/0.571
2ycwCAUBeta-1 adrenergic receptor/0.569
2ycyP32Beta-1 adrenergic receptor/0.569
4ldeP0GBeta-2 adrenergic receptor/0.564
4amiG90Beta-1 adrenergic receptor/0.559
4gbrCAUBeta-2 adrenergic receptor/0.558
5a8eXTKBeta-1 adrenergic receptor/0.550
4bvnP32Beta-1 adrenergic receptor/0.546
2y0468HBeta-1 adrenergic receptor/0.532
3sn6P0GBeta-2 adrenergic receptor/0.512
5f8uP32Beta-1 adrenergic receptor/0.510
3zpqXF5Beta-1 adrenergic receptor/0.509
4ldlXQCBeta-2 adrenergic receptor/0.506
2y035FWBeta-1 adrenergic receptor/0.505
2vt4P32Beta-1 adrenergic receptor/0.503
2y01Y00Beta-1 adrenergic receptor/0.500
4iarERM5-hydroxytryptamine receptor 1B/0.483
3p0gP0GBeta-2 adrenergic receptor/0.483
2y02WHJBeta-1 adrenergic receptor/0.478