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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cvyFADRE11660p

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3cvyFADRE11660p/1.000
3cvuFADRE11660p/0.662
2wq6FADRE11660p/0.651
2wq7FADRE11660p/0.651
2wb2FADRE11660p/0.639
1np7FADCryptochrome DASH/0.553
4djaFAD(6-4) photolyase/0.545
4jzyFADCryptochrome-1/0.541
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.531
2j4dFADCryptochrome DASH, chloroplastic/mitochondrial/0.529
4i6gFADCryptochrome-2/0.525
3zxsFADDeoxyribodipyrimidine photolyase-related protein/0.519
4gu5FADCryptochrome-1/0.508
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.503
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.496
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.489
2j08FADDeoxyribodipyrimidine photo-lyase4.1.99.30.489
1owmFADDeoxyribodipyrimidine photo-lyase4.1.99.30.487
1ownFADDeoxyribodipyrimidine photo-lyase4.1.99.30.482
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.482
1iqrFADDeoxyribodipyrimidine photo-lyase4.1.99.30.481
1u3dFADCryptochrome-1/0.480
3umvFADDeoxyribodipyrimidine photo-lyase4.1.99.30.478
1owoFADDeoxyribodipyrimidine photo-lyase4.1.99.30.477
2j07FADDeoxyribodipyrimidine photo-lyase4.1.99.30.472
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.471
1owpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.461
2j09FADDeoxyribodipyrimidine photo-lyase4.1.99.30.461
4mlp2CXCryptochrome-2/0.451
1u3cFADCryptochrome-1/0.448