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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3coz54HPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3coz54HPantothenate synthetase6.3.2.11.000
3coy53HPantothenate synthetase6.3.2.10.831
1n2iPAJPantothenate synthetase6.3.2.10.607
3ivgFG5Pantothenate synthetase6.3.2.10.591
3isjA8DPantothenate synthetase6.3.2.10.589
1n2hPAJPantothenate synthetase6.3.2.10.581
3iocA5DPantothenate synthetase6.3.2.10.573
3cow52HPantothenate synthetase6.3.2.10.572
3iobA4DPantothenate synthetase6.3.2.10.563
3iodA6DPantothenate synthetase6.3.2.10.560
3imgBZ2Pantothenate synthetase6.3.2.10.558
3imeBZ2Pantothenate synthetase6.3.2.10.543
3ag6PAJPantothenate synthetase/0.534
3ioeA7DPantothenate synthetase6.3.2.10.531
5hg0SAMPantothenate synthetase/0.524
2x3fAPCPantothenate synthetase/0.509
3ivxFG6Pantothenate synthetase6.3.2.10.502
1n2jPAFPantothenate synthetase6.3.2.10.453