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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3coxFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3coxFADCholesterol oxidase1.1.3.61.000
1mxtFAECholesterol oxidase1.1.3.60.575
1cc2FADCholesterol oxidase1.1.3.60.573
1n4uFAECholesterol oxidase1.1.3.60.564
4u2sFDACholesterol oxidase1.1.3.60.562
4u2lSFDCholesterol oxidase1.1.3.60.554
4xxgFADCholesterol oxidase1.1.3.60.513
3gyjFADCholesterol oxidase1.1.3.60.512
1ijhFADCholesterol oxidase1.1.3.60.508
1b4vFADCholesterol oxidase1.1.3.60.507
4qi7FADCellobiose dehydrogenase/0.506
4qi4FADCellobiose dehydrogenase/0.502
4xwrFADCholesterol oxidase1.1.3.60.501
1n4vFADCholesterol oxidase1.1.3.60.499
3gyiFADCholesterol oxidase1.1.3.60.499
1cboFADCholesterol oxidase1.1.3.60.493
3cnjFADCholesterol oxidase1.1.3.60.492
1b8sFADCholesterol oxidase1.1.3.60.486
4rekFADCholesterol oxidase1.1.3.60.486
4qi5FADCellobiose dehydrogenase/0.462