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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cdeN3HGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cdeN3HGenome polyprotein2.7.7.481.000
3cwj321Genome polyprotein2.7.7.480.674
3g86T18Genome polyprotein2.7.7.480.644
3tyvHI3Genome polyprotein2.7.7.480.638
4mk928RGenome polyprotein2.7.7.480.638
4mkb28VGenome polyprotein2.7.7.480.634
3bsc2PDGenome polyprotein2.7.7.480.631
3h5uH5UGenome polyprotein2.7.7.480.623
3csoXNIGenome polyprotein2.7.7.480.620
2giqNN2Genome polyprotein2.7.7.480.619
3bsa1PDGenome polyprotein2.7.7.480.619
4ih61EPGenome polyprotein2.7.7.480.614
3h5sH5SGenome polyprotein2.7.7.480.612
4mka2AYGenome polyprotein2.7.7.480.610
3u4o08EGenome polyprotein2.7.7.480.609
3u4r08FGenome polyprotein2.7.7.480.608
4ih71ERGenome polyprotein2.7.7.480.598
4mk728OGenome polyprotein2.7.7.480.598
4iz02BIGenome polyprotein2.7.7.480.595
2gc8885Polyprotein/0.592
3h98B5PGenome polyprotein2.7.7.480.592
3uph0C1Genome polyprotein2.7.7.480.589
3d28B34Genome polyprotein2.7.7.480.583
4mk828QGenome polyprotein2.7.7.480.578
3ska053Genome polyprotein2.7.7.480.576
2fvc888Polyprotein/0.569
3cvkN34Genome polyprotein2.7.7.480.565
3golXNDGenome polyprotein2.7.7.480.565
3d5m4MSGenome polyprotein2.7.7.480.562
3gnvXNZGenome polyprotein2.7.7.480.562
3h59H59Genome polyprotein2.7.7.480.559
3upi0C2Genome polyprotein2.7.7.480.557
3br9DEYGenome polyprotein2.7.7.480.549
1z4uPH9Polyprotein/0.546
3hkyIX6Genome polyprotein2.7.7.480.546
3e51N35Genome polyprotein2.7.7.480.545
3igvB80Genome polyprotein2.7.7.480.542
3gnwXNCGenome polyprotein2.7.7.480.538
3co93MSGenome polyprotein2.7.7.480.537
3ske054Genome polyprotein2.7.7.480.528
3gynB42Genome polyprotein2.7.7.480.517
3h2lYAKGenome polyprotein2.7.7.480.516
3hkwIX6Genome polyprotein2.7.7.480.505
2yoj8Y6Genome polyprotein2.7.7.480.504
4eaw0NQGenome polyprotein2.7.7.480.499
1yvfPH7Polyprotein/0.478
3fqk79ZGenome polyprotein2.7.7.480.458
2qe5617Polyprotein/0.450