Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3c6uM22Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3c6uM22Gag-Pol polyprotein2.7.7.491.000
3t1a5MAGag-Pol polyprotein2.7.7.490.743
3drpR8EGag-Pol polyprotein2.7.7.490.654
2wonZZEGag-Pol polyprotein2.7.7.490.650
4h4m494Gag-Pol polyprotein2.7.7.490.643
4h4o506Gag-Pol polyprotein2.7.7.490.633
3c6tM14Gag-Pol polyprotein2.7.7.490.627
3t195MAGag-Pol polyprotein2.7.7.490.620
3dyaPZLGag-Pol polyprotein2.7.7.490.616
4mfb29TGag-Pol polyprotein2.7.7.490.615
4rw6494Gag-Pol polyprotein2.7.7.490.607
3lakKR1Gag-Pol polyprotein2.7.7.490.605
3lalKRVGag-Pol polyprotein2.7.7.490.604
2be2R22Gag-Pol polyprotein2.7.7.490.597
3dokGWJPol protein/0.594
2ynhEURGag-Pol polyprotein2.7.7.490.586
4rw4494Gag-Pol polyprotein2.7.7.490.584
3dmjGWEPol protein/0.580
3drrR8EGag-Pol polyprotein2.7.7.490.571
2ynfWHUGag-Pol polyprotein2.7.7.490.559
3e01PZ2Gag-Pol polyprotein2.7.7.490.559
4lsl1YQGag-Pol polyprotein2.7.7.490.555
2b5j3ACGag-Pol polyprotein2.7.7.490.552
3tamM06Gag-Pol polyprotein2.7.7.490.547
3dolGWIPol protein/0.544
2jleI15Reverse transcriptase/RNaseH/0.539
3dlgGWEGag-Pol polyprotein2.7.7.490.532
3is9AC7Gag-Pol polyprotein2.7.7.490.528
3dleGFAGag-Pol polyprotein2.7.7.490.515
1c1bGCAGag-Pol polyprotein2.7.7.490.511
1jlaTNKGag-Pol polyprotein2.7.7.490.496
1rt1MKCGag-Pol polyprotein2.7.7.490.493
1ep4S11Gag-Pol polyprotein2.7.7.490.491
3qlhT27Gag-Pol polyprotein2.7.7.490.491
1rt2TNKGag-Pol polyprotein2.7.7.490.485
2ze2T27Gag-Pol polyprotein2.7.7.490.484
1rtiHEFGag-Pol polyprotein2.7.7.490.480
3bgrT27Gag-Pol polyprotein2.7.7.490.478
4i2pG73Gag-Pol polyprotein2.7.7.490.473
3di6PDZGag-Pol polyprotein2.7.7.490.470
4i2q1BTGag-Pol polyprotein2.7.7.490.467
4i7fNVEGag-Pol polyprotein2.7.7.490.463
1tl3H20Gag-Pol polyprotein2.7.7.490.458
4ib4ERM5-hydroxytryptamine receptor 2B/0.457
1s1vTNKGag-Pol polyprotein2.7.7.490.456
1c1c612Gag-Pol polyprotein2.7.7.490.454
2y6fM9FIsopenicillin N synthase1.21.3.10.449
4ia3BIVVitamin D3 receptor A/0.449
2zd1T27Gag-Pol polyprotein2.7.7.490.444
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.443
1tktH12Gag-Pol polyprotein2.7.7.490.441
4ifvT27Gag-Pol polyprotein2.7.7.490.441