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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.11.000
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.574
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.465
3mfrANPPeripheral plasma membrane protein CASK2.7.11.10.463
2vu3LZECyclin-dependent kinase 22.7.11.220.460
3mfsANPPeripheral plasma membrane protein CASK2.7.11.10.458
4bkz1WSMaternal embryonic leucine zipper kinase2.7.11.10.445
2zjwREFCasein kinase II subunit alpha2.7.11.10.442
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.441