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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bsa1PDGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bsa1PDGenome polyprotein2.7.7.481.000
3e51N35Genome polyprotein2.7.7.480.698
3tyvHI3Genome polyprotein2.7.7.480.620
3upi0C2Genome polyprotein2.7.7.480.605
2gc8885Polyprotein/0.603
3d5m4MSGenome polyprotein2.7.7.480.600
3d28B34Genome polyprotein2.7.7.480.598
4mka2AYGenome polyprotein2.7.7.480.598
4ih71ERGenome polyprotein2.7.7.480.591
4iz02BIGenome polyprotein2.7.7.480.587
3igvB80Genome polyprotein2.7.7.480.586
3u4o08EGenome polyprotein2.7.7.480.586
3h5uH5UGenome polyprotein2.7.7.480.585
3bsc2PDGenome polyprotein2.7.7.480.584
1z4uPH9Polyprotein/0.583
3ska053Genome polyprotein2.7.7.480.580
3h59H59Genome polyprotein2.7.7.480.577
3cvkN34Genome polyprotein2.7.7.480.574
3g86T18Genome polyprotein2.7.7.480.573
4ih61EPGenome polyprotein2.7.7.480.573
3gnwXNCGenome polyprotein2.7.7.480.571
4mk928RGenome polyprotein2.7.7.480.569
3cdeN3HGenome polyprotein2.7.7.480.568
3cwj321Genome polyprotein2.7.7.480.565
4mk728OGenome polyprotein2.7.7.480.565
3h2lYAKGenome polyprotein2.7.7.480.564
3h5sH5SGenome polyprotein2.7.7.480.556
3hkyIX6Genome polyprotein2.7.7.480.555
4mkb28VGenome polyprotein2.7.7.480.552
2fvc888Polyprotein/0.551
4eaw0NQGenome polyprotein2.7.7.480.548
4mk828QGenome polyprotein2.7.7.480.545
3co93MSGenome polyprotein2.7.7.480.544
3gnvXNZGenome polyprotein2.7.7.480.538
3uph0C1Genome polyprotein2.7.7.480.537
2yoj8Y6Genome polyprotein2.7.7.480.536
3csoXNIGenome polyprotein2.7.7.480.534
3ske054Genome polyprotein2.7.7.480.526
1yvfPH7Polyprotein/0.522
3golXNDGenome polyprotein2.7.7.480.522
3hkwIX6Genome polyprotein2.7.7.480.502
3h98B5PGenome polyprotein2.7.7.480.501