sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 1.000 | |
| 2qo4 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.458 | |
| 2x5z | GDD | Mannose-1-phosphate guanylyltransferase | / | 0.454 | |
| 2i4p | DRH | Peroxisome proliferator-activated receptor gamma | / | 0.453 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.453 | |
| 4b3a | TAC | Tetracycline repressor protein class D | / | 0.451 | |
| 1zeo | C01 | Peroxisome proliferator-activated receptor gamma | / | 0.445 | |
| 2qo6 | CHD | Fatty acid-binding protein 10-A, liver basic | / | 0.445 | |
| 3inm | NDP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.442 | |
| 4xj3 | GTP | Cyclic GMP-AMP synthase | / | 0.441 | |
| 1hk3 | T44 | Serum albumin | / | 0.440 | |
| 1ykd | CMP | Adenylate cyclase | / | 0.440 | |
| 2i4j | DRJ | Peroxisome proliferator-activated receptor gamma | / | 0.440 | |
| 5fkl | TDC | Tetracycline repressor protein class D | / | 0.440 |