Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bemFMNPutative NAD(P)H nitroreductase MhqN1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bemFMNPutative NAD(P)H nitroreductase MhqN11.000
3of4FMNNitroreductase/0.487
1ylrFMNOxygen-insensitive NAD(P)H nitroreductase/0.478
1necFMNOxygen-insensitive NAD(P)H nitroreductase10.465
3ge6FMNNitroreductase/0.464
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.459
1ooqFMNOxygen-insensitive NAD(P)H nitroreductase/0.457
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.457
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.453
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.451
2hayFMNPutative NAD(P)H-flavin oxidoreductase/0.448
3eofFMNPutative oxidase/0.444
1ykiFMNOxygen-insensitive NAD(P)H nitroreductase/0.440