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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3b6dFAECholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3b6dFAECholesterol oxidase1.1.3.61.000
4xwrFADCholesterol oxidase1.1.3.60.905
4xxgFADCholesterol oxidase1.1.3.60.898
1b8sFADCholesterol oxidase1.1.3.60.868
1n1pFADCholesterol oxidase1.1.3.60.866
1ijhFADCholesterol oxidase1.1.3.60.862
1n4wFADCholesterol oxidase1.1.3.60.848
1n4vFADCholesterol oxidase1.1.3.60.813
3gyjFADCholesterol oxidase1.1.3.60.799
1cboFADCholesterol oxidase1.1.3.60.750
4u2tFADCholesterol oxidase1.1.3.60.716
2gewFADCholesterol oxidase1.1.3.60.706
3gyiFADCholesterol oxidase1.1.3.60.677
3cnjFADCholesterol oxidase1.1.3.60.659
4rekFADCholesterol oxidase1.1.3.60.570
3coxFADCholesterol oxidase1.1.3.60.535
3lshFADPyranose 2-oxidase/0.471
1b4vFADCholesterol oxidase1.1.3.60.466
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.455
3f1kNAPUncharacterized oxidoreductase YciK10.448
4rpgFADUDP-galactopyranose mutase5.4.99.90.448