Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3b05FNRIsopentenyl-diphosphate delta-isomerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3b05FNRIsopentenyl-diphosphate delta-isomerase/1.000
3b05IPEIsopentenyl-diphosphate delta-isomerase/0.686
3b03VNRIsopentenyl-diphosphate delta-isomerase/0.654
3b04OOPIsopentenyl-diphosphate delta-isomerase/0.635
2zrvFNRIsopentenyl-diphosphate delta-isomerase/0.624
2zryFNRIsopentenyl-diphosphate delta-isomerase/0.624
2zrxFMNIsopentenyl-diphosphate delta-isomerase/0.616
2zrzFNRIsopentenyl-diphosphate delta-isomerase/0.610
3vkjFNRIsopentenyl-diphosphate delta-isomerase/0.590
2zruFMNIsopentenyl-diphosphate delta-isomerase/0.535
3dh7FMNIsopentenyl-diphosphate delta-isomerase/0.505
3bi6396Wee1-like protein kinase2.7.10.20.461
4r81FMNPredicted NADH dehydrogenase/0.457
3p8jFMNPentaerythritol tetranitrate reductase/0.450
2djxFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.449
3gyeFMNDihydroorotate dehydrogenase (fumarate)/0.449
3hl0NADMaleylacetate reductase/0.447
5dp2NAPCurF/0.445
2c27ACOMycothiol acetyltransferase2.3.1.1890.443
2gjlFMNNitronate monooxygenase1.13.12.160.442
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.442
4j7hTRHPCZA361.3/0.442
3p62FMNPentaerythritol tetranitrate reductase/0.441
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.440
3f03FMNPentaerythritol tetranitrate reductase/0.440
3p84FMNPentaerythritol tetranitrate reductase/0.440