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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3awhFMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3awhFMNFMN-binding protein/1.000
3vy2FMNFMN-binding protein/0.665
3a6rFMNFMN-binding protein/0.634
1flmFMNFMN-binding protein/0.624
3a6qFMNFMN-binding protein/0.620
2e83FMNFMN-binding protein/0.608
3a20FMNFMN-binding protein/0.598
3vy5FMNFMN-binding protein/0.594
3amfFMNFMN-binding protein/0.590
1wliFMNFMN-binding protein/0.499
1wlkFMNFMN-binding protein/0.498
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.461
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.454
1t2cNAIL-lactate dehydrogenase1.1.1.270.447
1xe55FEPlasmepsin-23.4.23.390.443
4ejn0R4RAC-alpha serine/threonine-protein kinase2.7.11.10.442