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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ar7TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.8

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ar7TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.81.000
3ar6TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.736
3nalDBKCalcium-transporting ATPase/0.647
3ar5TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.642
2agvTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.622
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.621
2dqsTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.578
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
3p99LNPLanosterol 14-alpha-demethylase/0.456
3irxUDRGag-Pol polyprotein2.7.7.490.451
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.450
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.448
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.447
4j6bPLOCytochrome P450 monooxygenase/0.446
3efwAK8Aurora kinase A2.7.11.10.443
3dxjNE6DNA-directed RNA polymerase subunit beta/0.440
3dxjNE6DNA-directed RNA polymerase subunit beta'/0.440
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440