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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3akyAP5Adenylate kinase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3akyAP5Adenylate kinase/1.000
1s3gAP5Adenylate kinase/0.581
1e4vAP5Adenylate kinase/0.549
4qbfAP5Adenylate kinase/0.527
4mkhAP5Adenylate kinase/0.495
3hprAP5Adenylate kinase/0.494
4typAP5Adenylate kinase/0.492
1zioAP5Adenylate kinase/0.485
4jlaADPAdenylate kinase/0.482
4jlpADPAdenylate kinase/0.466
4tyqAP5Adenylate kinase/0.455
2eu8AP5Adenylate kinase/0.453
4qbgAP5Adenylate kinase/0.446
4jlbADPAdenylate kinase/0.445