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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3af2ACPPantothenate kinase2.7.1.33

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3af2ACPPantothenate kinase2.7.1.331.000
3af4GCPPantothenate kinase2.7.1.330.599
3af3GCPPantothenate kinase2.7.1.330.598
2getCOKPantothenate kinase2.7.1.330.579
2zsbADPPantothenate kinase2.7.1.330.545
2gesCOKPantothenate kinase2.7.1.330.542
2gevCOKPantothenate kinase2.7.1.330.531
1esmCOAPantothenate kinase2.7.1.330.516
3af1GDPPantothenate kinase2.7.1.330.512
4bfsZVSPantothenate kinase2.7.1.330.511
2zsdCOAPantothenate kinase2.7.1.330.508
2zsaADPPantothenate kinase2.7.1.330.496
2zseACPPantothenate kinase2.7.1.330.492
3af0GDPPantothenate kinase2.7.1.330.492
2zs8ADPPantothenate kinase2.7.1.330.480
2zs9ADPPantothenate kinase2.7.1.330.459