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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3af0GDPPantothenate kinase2.7.1.33

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3af0GDPPantothenate kinase2.7.1.331.000
3af1GDPPantothenate kinase2.7.1.330.659
2zs8ADPPantothenate kinase2.7.1.330.603
2zs9ADPPantothenate kinase2.7.1.330.594
2gesCOKPantothenate kinase2.7.1.330.570
2gevCOKPantothenate kinase2.7.1.330.546
2zsbADPPantothenate kinase2.7.1.330.544
3af4GCPPantothenate kinase2.7.1.330.527
2getCOKPantothenate kinase2.7.1.330.517
3aezGDPPantothenate kinase2.7.1.330.517
2zsaADPPantothenate kinase2.7.1.330.514
3af2ACPPantothenate kinase2.7.1.330.498
2zsdCOAPantothenate kinase2.7.1.330.489
3af3GCPPantothenate kinase2.7.1.330.476
1esmCOAPantothenate kinase2.7.1.330.473
2geuCOKPantothenate kinase2.7.1.330.472
4bfwZVWPantothenate kinase2.7.1.330.443