scPDB - Distribution of Binding site Similarity values of 3a4t entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3a4t	SFG	tRNA (cytosine(48)-C(5))-methyltransferase	2.1.1

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3a4t	SFG	tRNA (cytosine(48)-C(5))-methyltransferase	2.1.1	1.000
4fzv	SAM	5-methylcytosine rRNA methyltransferase NSUN4	2.1.1	0.484
2yxl	SFG	450aa long hypothetical fmu protein	/	0.482
4fp9	SAM	5-methylcytosine rRNA methyltransferase NSUN4	2.1.1	0.472