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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2zx5ZX5Alpha-L-fucosidase, putative

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2zx5ZX5Alpha-L-fucosidase, putative/1.000
2zxbZXBAlpha-L-fucosidase, putative/0.747
2zx9ZX9Alpha-L-fucosidase, putative/0.711
2zx6ZX6Alpha-L-fucosidase, putative/0.673
2zx7ZX7Alpha-L-fucosidase, putative/0.639
2zx8ZX8Alpha-L-fucosidase, putative/0.634
1j7uANPAminoglycoside 3'-phosphotransferase2.7.1.950.480
2bkkADPAminoglycoside 3'-phosphotransferase2.7.1.950.468
2exlGDMEndoplasmin/0.466
4nj32KDCyclin-dependent kinase 22.7.11.220.463
2nomDUTPoly(A) polymerase, putative/0.454
3tm0ANPAminoglycoside 3'-phosphotransferase2.7.1.950.447
4bz7B3NHistone deacetylase/0.447
3lpfZ77Beta-glucuronidase3.2.1.310.446
3hv4L51Mitogen-activated protein kinase 14/0.443
4otiMI1Serine/threonine-protein kinase N1/0.443
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.442
2vqsBVDDeoxynucleoside kinase/0.440