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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2zbwFADFerredoxin--NADP reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2zbwFADFerredoxin--NADP reductase/1.000
3ab1FADFerredoxin--NADP reductase1.18.1.20.581
3lzxFADFerredoxin--NADP reductase 21.18.1.20.542
3rnmFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.482
5er0FADUncharacterized NAD(FAD)-dependent dehydrogenase/0.473
1ebdFADDihydrolipoyl dehydrogenase1.8.1.40.463
4gcmFADThioredoxin reductase1.8.1.90.463
3ctyFADProbable thioredoxin reductase/0.458
3g5sFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.458
3qfbFADThioredoxin reductase 1, cytoplasmic1.8.1.90.458
4mo2FADUDP-galactopyranose mutase/0.457
2q7vFADThioredoxin reductase/0.456
1qo8FADFumarate reductase flavoprotein subunit/0.454
2a8xFADDihydrolipoyl dehydrogenase1.8.1.40.454
3bg7FADPyranose 2-oxidase/0.453
4eqwFADCoenzyme A disulfide reductase/0.452
4jq9FADDihydrolipoyl dehydrogenase/0.452
4kprFADThioredoxin reductase 1, cytoplasmic1.8.1.90.451
4dnaFADProbable glutathione reductase/0.450
1h6vFADThioredoxin reductase 1, cytoplasmic1.8.1.90.449
3cib314Beta-secretase 13.4.23.460.449
1d4cFADFumarate reductase flavoprotein subunit1.3.5.40.448
2q0kFADThioredoxin reductase1.8.1.90.448
3nsh957Beta-secretase 13.4.23.460.448
4em4FADCoenzyme A disulfide reductase/0.448
4i0i957Beta-secretase 13.4.23.460.448
5j60FADThioredoxin reductase/0.447
2i0zFADNAD(FAD)-utilizing dehydrogenases/0.446
4jnqFDAThioredoxin reductase/0.446
1c6yMK1Protease/0.445
2cfyFADThioredoxin reductase 1, cytoplasmic1.8.1.90.445
2eq7FADDihydrolipoyl dehydrogenase/0.445
3s5wFADL-ornithine N(5)-monooxygenase/0.445
3ixj586Beta-secretase 13.4.23.460.444
4a6cQG9Gag-Pol polyprotein3.4.23.160.444
1gerFADGlutathione reductase1.8.1.70.443
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1k4qFADGlutathione reductase, mitochondrial1.8.1.70.442
1greFADGlutathione reductase, mitochondrial1.8.1.70.441
2avvMK1Gag-Pol polyprotein3.4.23.160.441
4nwzFADFAD-dependent pyridine nucleotide-disulfide oxidoreductase/0.441
2hqmFADGlutathione reductase1.8.1.70.440
2xveFADPutative flavin-containing monooxygenase/0.440