scPDB - Distribution of Binding site Similarity values of 2z50 entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2z50	028	Geranylgeranyl pyrophosphate synthase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2z50	028	Geranylgeranyl pyrophosphate synthase	/	1.000
2z78	H86	Geranylgeranyl pyrophosphate synthase	/	0.545
2z4z	SC0	Geranylgeranyl pyrophosphate synthase	/	0.533
2e8w	IPE	Geranylgeranyl pyrophosphate synthase	/	0.526
2e94	364	Geranylgeranyl pyrophosphate synthase	/	0.516
2z4w	749	Geranylgeranyl pyrophosphate synthase	/	0.452