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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2yoj8Y6Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2yoj8Y6Genome polyprotein2.7.7.481.000
3tyvHI3Genome polyprotein2.7.7.480.769
3u4r08FGenome polyprotein2.7.7.480.668
3ske054Genome polyprotein2.7.7.480.611
3u4o08EGenome polyprotein2.7.7.480.611
3uph0C1Genome polyprotein2.7.7.480.602
3hkwIX6Genome polyprotein2.7.7.480.591
3h59H59Genome polyprotein2.7.7.480.587
3igvB80Genome polyprotein2.7.7.480.580
3hkyIX6Genome polyprotein2.7.7.480.573
3d5m4MSGenome polyprotein2.7.7.480.571
3ska053Genome polyprotein2.7.7.480.567
4mk928RGenome polyprotein2.7.7.480.550
2gc8885Polyprotein/0.540
3h2lYAKGenome polyprotein2.7.7.480.536
4mka2AYGenome polyprotein2.7.7.480.532
2giqNN2Genome polyprotein2.7.7.480.531
3bsc2PDGenome polyprotein2.7.7.480.531
3d28B34Genome polyprotein2.7.7.480.530
3g86T18Genome polyprotein2.7.7.480.530
4mk728OGenome polyprotein2.7.7.480.528
3br9DEYGenome polyprotein2.7.7.480.520
4eaw0NQGenome polyprotein2.7.7.480.516
1yvfPH7Polyprotein/0.514
4mkb28VGenome polyprotein2.7.7.480.513
4ih61EPGenome polyprotein2.7.7.480.508
3co93MSGenome polyprotein2.7.7.480.498
3gynB42Genome polyprotein2.7.7.480.493
3golXNDGenome polyprotein2.7.7.480.488
4ih71ERGenome polyprotein2.7.7.480.487
3h5uH5UGenome polyprotein2.7.7.480.484
3upi0C2Genome polyprotein2.7.7.480.480
3csoXNIGenome polyprotein2.7.7.480.479
3e51N35Genome polyprotein2.7.7.480.475
3h5sH5SGenome polyprotein2.7.7.480.472
3gnwXNCGenome polyprotein2.7.7.480.468
4iz02BIGenome polyprotein2.7.7.480.459
2fvc888Polyprotein/0.458
1z4uPH9Polyprotein/0.456
3cvkN34Genome polyprotein2.7.7.480.452
3cwj321Genome polyprotein2.7.7.480.441