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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ynhEURGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ynhEURGag-Pol polyprotein2.7.7.491.000
3dyaPZLGag-Pol polyprotein2.7.7.490.674
3t1a5MAGag-Pol polyprotein2.7.7.490.657
3c6uM22Gag-Pol polyprotein2.7.7.490.650
3c6tM14Gag-Pol polyprotein2.7.7.490.637
4h4o506Gag-Pol polyprotein2.7.7.490.636
3e01PZ2Gag-Pol polyprotein2.7.7.490.635
4h4m494Gag-Pol polyprotein2.7.7.490.632
3t195MAGag-Pol polyprotein2.7.7.490.628
3lakKR1Gag-Pol polyprotein2.7.7.490.627
3tamM06Gag-Pol polyprotein2.7.7.490.625
4mfb29TGag-Pol polyprotein2.7.7.490.618
2be2R22Gag-Pol polyprotein2.7.7.490.610
3dokGWJPol protein/0.600
3lalKRVGag-Pol polyprotein2.7.7.490.600
3drpR8EGag-Pol polyprotein2.7.7.490.589
4rw6494Gag-Pol polyprotein2.7.7.490.581
4rw4494Gag-Pol polyprotein2.7.7.490.570
4lsl1YQGag-Pol polyprotein2.7.7.490.569
3drrR8EGag-Pol polyprotein2.7.7.490.558
2ynfWHUGag-Pol polyprotein2.7.7.490.550
2wonZZEGag-Pol polyprotein2.7.7.490.547
3dmjGWEPol protein/0.543
3dlgGWEGag-Pol polyprotein2.7.7.490.534
1rt1MKCGag-Pol polyprotein2.7.7.490.526
3dolGWIPol protein/0.522
2b5j3ACGag-Pol polyprotein2.7.7.490.519
1klmSPPGag-Pol polyprotein2.7.7.490.516
3dleGFAGag-Pol polyprotein2.7.7.490.510
1c1bGCAGag-Pol polyprotein2.7.7.490.501
1rtiHEFGag-Pol polyprotein2.7.7.490.494
1jlaTNKGag-Pol polyprotein2.7.7.490.487
3di6PDZGag-Pol polyprotein2.7.7.490.481
2jleI15Reverse transcriptase/RNaseH/0.480
4i7fNVEGag-Pol polyprotein2.7.7.490.471
1c1c612Gag-Pol polyprotein2.7.7.490.469
3qlhT27Gag-Pol polyprotein2.7.7.490.467
1rt2TNKGag-Pol polyprotein2.7.7.490.462
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.460
1ep4S11Gag-Pol polyprotein2.7.7.490.458
3a1l2CCCytochrome P450/0.454
4ia3BIVVitamin D3 receptor A/0.454
3vt8YI3Vitamin D3 receptor/0.453
4i2q1BTGag-Pol polyprotein2.7.7.490.453
3vt65YIVitamin D3 receptor/0.451
4kf1HT5Aryldialkylphosphatase3.1.8.10.451
2hcdBIVVitamin D3 receptor A/0.450
2ykjYKJHeat shock protein HSP 90-alpha/0.450
3vt9YI4Vitamin D3 receptor/0.450
3vt7VDXVitamin D3 receptor/0.449
1s1vTNKGag-Pol polyprotein2.7.7.490.448
2vbdV10Isopenicillin N synthase1.21.3.10.447
2y6fM9FIsopenicillin N synthase1.21.3.10.447
3i0sRT7Gag-Pol polyprotein2.7.7.490.447
4erwSTUCyclin-dependent kinase 22.7.11.220.447
1oc1ASVIsopenicillin N synthase1.21.3.10.445
3wmxNADNAD dependent epimerase/dehydratase/0.445
3bgrT27Gag-Pol polyprotein2.7.7.490.444
4fhh0U3Vitamin D3 receptor A/0.444
2xlsFADPutative flavin-containing monooxygenase/0.443
3inxJZCHeat shock protein HSP 90-alpha/0.443
3vt5YI2Vitamin D3 receptor/0.443
4nc3ERM5-hydroxytryptamine receptor 2B/0.442
7catNDPCatalase1.11.1.60.442
2ze2T27Gag-Pol polyprotein2.7.7.490.441
3abaFLICytochrome P450/0.441
1fm9570Peroxisome proliferator-activated receptor gamma/0.440
4gkvNADAlcohol dehydrogenase, propanol-preferring1.1.1.10.440