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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2yncYNCGlycylpeptide N-tetradecanoyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2yncYNCGlycylpeptide N-tetradecanoyltransferase/1.000
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.756
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.722
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.694
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.650
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.641
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.637
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.637
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.635
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.624
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.623
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.621
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.613
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.613
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.613
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.608
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.602
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.602
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.598
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.594
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.583
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.580
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/0.574
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.552
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.535
4caxMYAGlycylpeptide N-tetradecanoyltransferase2.3.1.970.442