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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ylzFADPhenylacetone monooxygenase1.14.13.92

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ylzFADPhenylacetone monooxygenase1.14.13.921.000
1w4xFADPhenylacetone monooxygenase1.14.13.920.645
2ylrFADPhenylacetone monooxygenase1.14.13.920.566
4d03FADPhenylacetone monooxygenase1.14.13.920.559
2ylsFADPhenylacetone monooxygenase1.14.13.920.554
4d04FADPhenylacetone monooxygenase1.14.13.920.516
2yltFADPhenylacetone monooxygenase1.14.13.920.513
2ylxFADPhenylacetone monooxygenase1.14.13.920.504
2ym2FADPhenylacetone monooxygenase1.14.13.920.504
4ntdFADThioredoxin reductase/0.460
4opiFDAConserved Archaeal protein/0.458
3k4cFADPyranose 2-oxidase/0.452
4aosFADSteroid monooxygenase/0.452
3axbFADPutative oxidoreductase/0.444
3sqpFADGlutathione reductase, mitochondrial1.8.1.70.441
5dbgNADIridoid synthase1.3.1.990.441