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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ylsFADPhenylacetone monooxygenase1.14.13.92

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ylsFADPhenylacetone monooxygenase1.14.13.921.000
2ylrFADPhenylacetone monooxygenase1.14.13.920.643
2ylxFADPhenylacetone monooxygenase1.14.13.920.639
4d03FADPhenylacetone monooxygenase1.14.13.920.627
2ylwFADPhenylacetone monooxygenase1.14.13.920.617
2ylzFADPhenylacetone monooxygenase1.14.13.920.612
4d04FADPhenylacetone monooxygenase1.14.13.920.605
2yltFADPhenylacetone monooxygenase1.14.13.920.596
2ym2FADPhenylacetone monooxygenase1.14.13.920.588
1w4xFADPhenylacetone monooxygenase1.14.13.920.579
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.508
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.493
4ntdFADThioredoxin reductase/0.475
4u8iFDAUDP-galactopyranose mutase/0.475
1h7wFADDihydropyrimidine dehydrogenase [NADP(+)]1.3.1.20.459
3kybFADUDP-galactopyranose mutase5.4.99.90.458
5br7FADUDP-galactopyranose mutase/0.455
1tehNADAlcohol dehydrogenase class-31.1.1.10.449
3intFDAUDP-galactopyranose mutase5.4.99.90.448
3axbFADPutative oxidoreductase/0.447
1grbFADGlutathione reductase, mitochondrial1.8.1.70.444
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.444
3cic316Beta-secretase 13.4.23.460.441
3dgzFADThioredoxin reductase 2, mitochondrial1.8.1.90.441
2rabFADGlutathione amide reductase/0.440
5emhNAPIridoid synthase1.3.1.990.440