sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2yef | ANP | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.662 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.633 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.625 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.621 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.616 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.612 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.610 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.608 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.606 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.604 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.603 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.602 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.600 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.598 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.598 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.582 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.582 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.579 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.579 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.578 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.577 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.576 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.575 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.571 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.570 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.567 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.564 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.561 | |
| 2hch | N5A | Endoplasmin | / | 0.560 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.559 | |
| 2o1u | ANP | Endoplasmin | / | 0.558 | |
| 2hg1 | N5O | Endoplasmin | / | 0.557 | |
| 2fyp | RDE | Endoplasmin | / | 0.553 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.552 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.550 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.549 | |
| 2gqp | PA7 | Endoplasmin | / | 0.549 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.548 | |
| 1u0z | RDC | Endoplasmin | / | 0.546 | |
| 2gfd | RDA | Endoplasmin | / | 0.546 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.546 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.545 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 1qy8 | RDI | Endoplasmin | / | 0.540 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 1ysz | NEC | Endoplasmin | / | 0.540 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.530 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.529 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.527 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.525 | |
| 1u2o | NEC | Endoplasmin | / | 0.523 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.523 | |
| 2o1v | ADP | Endoplasmin | / | 0.521 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.521 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.519 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.517 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.517 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.514 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.513 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 3ied | AN2 | HSP90 | / | 0.509 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.508 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.508 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 1yt0 | ADP | Endoplasmin | / | 0.507 | |
| 2esa | GDM | Endoplasmin | / | 0.507 | |
| 2exl | GDM | Endoplasmin | / | 0.507 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.506 | |
| 3h4l | ANP | DNA mismatch repair protein PMS1 | / | 0.503 | |
| 1u0y | PA7 | Endoplasmin | / | 0.502 | |
| 1gjv | AGS | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial | 2.7.11.4 | 0.501 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.500 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.499 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.498 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.497 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.496 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 2yke | YKE | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.492 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.491 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.490 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 1qy5 | NEC | Endoplasmin | / | 0.488 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.485 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.481 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.480 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 3d2r | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.477 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.476 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 4fcq | 2N6 | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.474 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.473 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.472 | |
| 3crl | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.472 | |
| 2yki | YKI | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.470 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.468 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.468 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.468 | |
| 1i5a | ACP | Chemotaxis protein CheA | 2.7.13.3 | 0.466 | |
| 2bu2 | ATP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.466 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.466 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 3rlp | 3RP | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 2e0a | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.464 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 1nhh | ANP | DNA mismatch repair protein MutL | / | 0.463 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.463 | |
| 2yi6 | 6QM | Heat shock protein HSP 90-alpha | / | 0.463 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.460 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.460 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.459 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.456 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.455 | |
| 1i5b | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.454 | |
| 2q8i | RDC | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial | 2.7.11.2 | 0.454 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.454 | |
| 4egh | 0OY | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 1i58 | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.452 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.452 | |
| 3inm | NDP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.452 | |
| 1z59 | ADP | Type 2 DNA topoisomerase 6 subunit B | / | 0.450 | |
| 2ykc | YKC | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.448 | |
| 4fk1 | FAD | Putative thioredoxin reductase | / | 0.447 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.446 | |
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.445 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.444 | |
| 2ykb | YKB | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 1i59 | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.442 | |
| 2hkj | RDC | Type 2 DNA topoisomerase 6 subunit B | / | 0.442 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 3eof | FMN | Putative oxidase | / | 0.442 | |
| 5bsg | NAP | Pyrroline-5-carboxylate reductase | / | 0.442 | |
| 2ye4 | 2FY | Heat shock protein HSP 90-alpha | / | 0.440 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.440 | |
| 4eor | 4SP | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.440 | |
| 4gb9 | 0WR | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.440 | |
| 4r1f | ADP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.440 | |
| 4z1f | H71 | Heat shock protein 75 kDa, mitochondrial | / | 0.440 |