sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2yee | 2EC | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.666 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.665 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.662 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.651 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.650 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.647 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.639 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.639 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.635 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.632 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.632 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.630 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.630 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.628 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.622 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.620 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.611 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.608 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.607 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.606 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.605 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.603 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.602 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.601 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.601 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.599 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.598 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.597 | |
| 2ykc | YKC | Heat shock protein HSP 90-alpha | / | 0.596 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.593 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.593 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.592 | |
| 2yke | YKE | Heat shock protein HSP 90-alpha | / | 0.589 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.586 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.581 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.577 | |
| 2yki | YKI | Heat shock protein HSP 90-alpha | / | 0.576 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.570 | |
| 2yk2 | YJW | Heat shock protein HSP 90-alpha | / | 0.559 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.555 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.553 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.542 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 3hz1 | 37D | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.531 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 4awo | 99B | Heat shock protein HSP 90-alpha | / | 0.527 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.525 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.524 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.520 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.519 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.517 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.515 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.514 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 1qy5 | NEC | Endoplasmin | / | 0.512 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.512 | |
| 4awp | 99A | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 4awq | 592 | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 4hy6 | FJ1 | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.505 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.502 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.500 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.499 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.497 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.496 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.496 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 1u0z | RDC | Endoplasmin | / | 0.494 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.494 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.493 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.493 | |
| 2yej | XQK | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 1qy8 | RDI | Endoplasmin | / | 0.490 | |
| 2exl | GDM | Endoplasmin | / | 0.490 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 4fcq | 2N6 | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 2uwd | 2GG | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.488 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.487 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 1ysz | NEC | Endoplasmin | / | 0.486 | |
| 3pej | BC2 | Endoplasmin homolog, putative | / | 0.486 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.485 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.484 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.483 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.482 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.481 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.480 | |
| 1u0y | PA7 | Endoplasmin | / | 0.479 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 2bsm | BSM | Heat shock protein HSP 90-alpha | / | 0.476 | |
| 4z1f | H71 | Heat shock protein 75 kDa, mitochondrial | / | 0.476 | |
| 2yk2 | YJX | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.475 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.474 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.473 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.473 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.473 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.473 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.472 | |
| 2hch | N5A | Endoplasmin | / | 0.472 | |
| 2yjx | YJX | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 2gqp | PA7 | Endoplasmin | / | 0.471 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.471 | |
| 3ied | AN2 | HSP90 | / | 0.471 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.468 | |
| 2hg1 | N5O | Endoplasmin | / | 0.467 | |
| 2w9s | TOP | Dihydrofolate reductase type 1 from Tn4003 | 1.5.1.3 | 0.466 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.466 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.465 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.463 | |
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 0.463 | |
| 2cgf | P2N | ATP-dependent molecular chaperone HSP82 | / | 0.462 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.462 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.461 | |
| 2fyp | RDE | Endoplasmin | / | 0.461 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 2esa | GDM | Endoplasmin | / | 0.460 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.459 | |
| 3crl | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.459 | |
| 2dvl | FAD | Acyl-CoA dehydrogenase | / | 0.458 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 4l3j | 5FI | Ribosomal protein S6 kinase beta-1 | 2.7.11.1 | 0.457 | |
| 1bk0 | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.455 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 2gfd | RDA | Endoplasmin | / | 0.454 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.454 | |
| 4bcq | TJF | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.454 | |
| 1f17 | NAI | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.452 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.452 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.451 | |
| 1diu | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 1fm4 | DXC | Major pollen allergen Bet v 1-L | / | 0.450 | |
| 1m13 | HYF | Nuclear receptor subfamily 1 group I member 2 | / | 0.450 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.449 | |
| 2cct | 2E1 | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.449 | |
| 2uxu | NAR | HTH-type transcriptional regulator TtgR | / | 0.449 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.449 | |
| 2znn | S44 | Peroxisome proliferator-activated receptor alpha | / | 0.449 | |
| 4l42 | 5FI | Ribosomal protein S6 kinase beta-1 | 2.7.11.1 | 0.449 | |
| 1zmd | NAI | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.448 | |
| 3gwf | NAP | Cyclohexanone monooxygenase | / | 0.447 | |
| 4l49 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 4qgi | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.447 | |
| 1sej | F89 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.446 | |
| 2mwg | FMN | Blue-light photoreceptor | / | 0.446 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.446 | |
| 2xx5 | 13N | ATP-dependent molecular chaperone HSP82 | / | 0.446 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.446 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 4mv1 | ADP | Biotin carboxylase | 6.3.4.14 | 0.446 | |
| 4n6h | EJ4 | Delta-type opioid receptor | / | 0.446 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.446 | |
| 1i58 | ACP | Chemotaxis protein CheA | 2.7.13.3 | 0.445 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.445 | |
| 2uxo | TAC | HTH-type transcriptional regulator TtgR | / | 0.445 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 3fwf | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.445 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.445 | |
| 4uym | VOR | 14-alpha sterol demethylase Cyp51B | / | 0.445 | |
| 1u2o | NEC | Endoplasmin | / | 0.444 | |
| 2cgw | 3C3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.444 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.444 | |
| 3hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.444 | |
| 6cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.444 | |
| 1ohr | 1UN | V-1 PROTEASE protein | / | 0.443 | |
| 2qa2 | FAD | Polyketide oxygenase CabE | / | 0.443 | |
| 2qhc | AB1 | Protease | / | 0.443 | |
| 3sgv | 2BJ | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.443 | |
| 4u9a | STU | Interleukin-1 receptor-associated kinase 4 | 2.7.11.1 | 0.443 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.442 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.442 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.442 | |
| 2vn0 | TDZ | Cytochrome P450 2C8 | / | 0.442 | |
| 2x7h | PFN | Prostaglandin reductase 3 | 1 | 0.442 | |
| 4j03 | FVS | Bifunctional epoxide hydrolase 2 | 3.1.3.76 | 0.442 | |
| 4nmb | FAD | Bifunctional protein PutA | / | 0.442 | |
| 5cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 1eio | GCH | Gastrotropin | / | 0.441 | |
| 1ia3 | TQ5 | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.441 | |
| 2i40 | BLZ | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.441 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 2wi2 | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 2y46 | MIV | Mycinamicin IV hydroxylase/epoxidase | / | 0.441 | |
| 3bhe | BZN | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 3ekq | ROC | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 3ft5 | MO8 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 3ssn | MVI | Mycinamicin VI 2''-O-methyltransferase | / | 0.441 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.441 | |
| 4l9k | EHF | Serum albumin | / | 0.441 | |
| 5bmv | VLB | Tubulin alpha-1B chain | / | 0.441 | |
| 5bmv | VLB | Tubulin beta chain | / | 0.441 | |
| 1zmc | NAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.440 | |
| 2zba | ZBA | Trichothecene 3-O-acetyltransferase | / | 0.440 | |
| 3jwm | 5WB | Dihydrofolate reductase | / | 0.440 | |
| 4bii | PYW | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.440 | |
| 4g3j | VNT | Lanosterol 14-alpha-demethylase | / | 0.440 | |
| 4h3c | 0YZ | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.440 | |
| 5a3b | APR | SIR2 family protein | / | 0.440 |