scPDB - Distribution of Binding site Similarity values of 2ydd entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2ydd	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2ydd	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	1.000
4wdg	A2P	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.662
4wdb	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.600
3zbz	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.574
2ydb	NAP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.572
4wdf	A2P	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.566
2yp0	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.548
3zbr	NAP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.548
2yq9	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.546
4wfr	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.523
2yoz	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.509
3zbs	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.490
2yph	QQY	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.484
4wda	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.484