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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ycfYCFSerine/threonine-protein kinase Chk22.7.11.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ycfYCFSerine/threonine-protein kinase Chk22.7.11.11.000
2yirYIRSerine/threonine-protein kinase Chk22.7.11.10.665
2w7xD1ASerine/threonine-protein kinase Chk22.7.11.10.563
2w0jZATSerine/threonine-protein kinase Chk22.7.11.10.552
2ycqUPXSerine/threonine-protein kinase Chk22.7.11.10.539
2xk9XK9Serine/threonine-protein kinase Chk22.7.11.10.534
2yitYITSerine/threonine-protein kinase Chk22.7.11.10.533
2ycrHCWSerine/threonine-protein kinase Chk22.7.11.10.528
2ycsNXPSerine/threonine-protein kinase Chk22.7.11.10.527
2yiqYIQSerine/threonine-protein kinase Chk22.7.11.10.513
4jbpYPHAurora kinase A2.7.11.10.492
4jboWPHAurora kinase A2.7.11.10.472