scPDB - Distribution of Binding site Similarity values of 2y4l entry / Site 1

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2y4l	GDP	Uncharacterized protein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2y4l	GDP	Uncharacterized protein	/	1.000
2bo7	GDP	Mannosylglycerate synthase	/	0.592
2y4m	GDX	Uncharacterized protein	/	0.592
2bo8	GDX	Mannosylglycerate synthase	/	0.521
2y4k	GDP	Uncharacterized protein	/	0.480
4y9x	UPG	Glucosyl-3-phosphoglycerate synthase	2.4.1.266	0.462