Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2xbm | SAH | Genome polyprotein |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
2xbm | SAH | Genome polyprotein | / | 1.000 | |
2p41 | SAH | Genome polyprotein | / | 0.560 | |
5jjr | SAH | Genome polyprotein | / | 0.542 | |
3eld | SFG | Methyltransferase | / | 0.540 | |
2pxa | SAH | Genome polyprotein | 2.7.7.48 | 0.538 | |
3evc | SAH | Genome polyprotein | 2.1.1.56 | 0.538 | |
3p8z | 36A | Genome polyprotein | 2.1.1.56 | 0.535 | |
4ctj | SAM | Genome polyprotein | / | 0.535 | |
4k6m | SAH | Genome polyprotein | / | 0.526 | |
4ctk | SAM | Genome polyprotein | / | 0.524 | |
3elu | SAM | Methyltransferase | / | 0.515 | |
3p8z | SAH | Genome polyprotein | 2.1.1.56 | 0.514 | |
3p97 | SAM | Genome polyprotein | 2.1.1.56 | 0.514 | |
2px2 | SAH | Genome polyprotein | 2.7.7.48 | 0.509 | |
3ely | SAH | Methyltransferase | / | 0.506 | |
5jjs | SAH | Genome polyprotein | / | 0.501 | |
2px5 | SAH | Genome polyprotein | 2.7.7.48 | 0.492 | |
2wa2 | SAM | Genome polyprotein | / | 0.492 | |
3evg | SAH | Genome polyprotein | 2.1.1.56 | 0.485 | |
2oxt | SAM | Genome polyprotein | / | 0.451 | |
3lkz | SFG | Genome polyprotein | / | 0.444 |