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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vnkFADNADPH:ferredoxin reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vnkFADNADPH:ferredoxin reductase/1.000
2bgjFADNADPH:ferredoxin reductase/0.652
2vnhFADNADPH:ferredoxin reductase/0.605
3crzFADFerredoxin--NADP+ reductase/0.583
2vnjFADNADPH:ferredoxin reductase/0.537
1a8pFADFerredoxin--NADP reductase/0.536
2qdxFADFerredoxin--NADP+ reductase/0.509
4fk8FADFerredoxin--NADP reductase/0.505
2bgiFADNADPH:ferredoxin reductase/0.499
4b4dFADFerredoxin-NADP reductase/0.495