scPDB - Distribution of Binding site Similarity values of 2vk4 entry / Site 2

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2vk4	TPP	Pyruvate decarboxylase	4.1.1.1

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2vk4	TPP	Pyruvate decarboxylase	4.1.1.1	1.000
1pvd	TPP	Pyruvate decarboxylase isozyme 1	/	0.535
1ovm	TPP	Indole-3-pyruvate decarboxylase	4.1.1.74	0.532
1qpb	TPP	Pyruvate decarboxylase isozyme 1	/	0.530
2w93	TPP	Pyruvate decarboxylase isozyme 1	/	0.522