Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vcmM11Isopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vcmM11Isopenicillin N synthase1.21.3.11.000
2vbpVB1Isopenicillin N synthase1.21.3.10.753
2wo7ASVIsopenicillin N synthase1.21.3.10.697
3zkyWT4Isopenicillin N synthase1.21.3.10.680
1blzACVIsopenicillin N synthase1.21.3.10.665
1bk0ACVIsopenicillin N synthase1.21.3.10.659
2y6fM9FIsopenicillin N synthase1.21.3.10.658
1hb3SCVIsopenicillin N synthase1.21.3.10.657
1qiqACCIsopenicillin N synthase1.21.3.10.655
1uzwCDHIsopenicillin N synthase1.21.3.10.647
2iviACWIsopenicillin N synthase1.21.3.10.644
2bu9HFVIsopenicillin N synthase1.21.3.10.643
1hb1OCVIsopenicillin N synthase1.21.3.10.642
1oc1ASVIsopenicillin N synthase1.21.3.10.636
2jb4A14Isopenicillin N synthase1.21.3.10.635
2vbdV10Isopenicillin N synthase1.21.3.10.632
1obnASVIsopenicillin N synthase1.21.3.10.628
2y60M8FIsopenicillin N synthase1.21.3.10.624
3zoiM2WIsopenicillin N synthase1.21.3.10.622
1qjfACSIsopenicillin N synthase1.21.3.10.619
1w06W05Isopenicillin N synthase1.21.3.10.615
4bb3KKAIsopenicillin N synthase1.21.3.10.598
3zkuHCVIsopenicillin N synthase1.21.3.10.594
2bjsACVIsopenicillin N synthase1.21.3.10.514
1odnAPVIsopenicillin N synthase1.21.3.10.497