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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vbpVB1Isopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vbpVB1Isopenicillin N synthase1.21.3.11.000
2vcmM11Isopenicillin N synthase1.21.3.10.757
2y6fM9FIsopenicillin N synthase1.21.3.10.686
2vbdV10Isopenicillin N synthase1.21.3.10.679
1qiqACCIsopenicillin N synthase1.21.3.10.677
2bu9HFVIsopenicillin N synthase1.21.3.10.670
1hb1OCVIsopenicillin N synthase1.21.3.10.660
1qjfACSIsopenicillin N synthase1.21.3.10.657
2iviACWIsopenicillin N synthase1.21.3.10.656
3zkyWT4Isopenicillin N synthase1.21.3.10.653
3zoiM2WIsopenicillin N synthase1.21.3.10.653
1hb3SCVIsopenicillin N synthase1.21.3.10.651
1oc1ASVIsopenicillin N synthase1.21.3.10.651
2jb4A14Isopenicillin N synthase1.21.3.10.650
1bk0ACVIsopenicillin N synthase1.21.3.10.647
1blzACVIsopenicillin N synthase1.21.3.10.647
1uzwCDHIsopenicillin N synthase1.21.3.10.638
2wo7ASVIsopenicillin N synthase1.21.3.10.633
1w06W05Isopenicillin N synthase1.21.3.10.629
1obnASVIsopenicillin N synthase1.21.3.10.625
2y60M8FIsopenicillin N synthase1.21.3.10.612
4bb3KKAIsopenicillin N synthase1.21.3.10.601
3zkuHCVIsopenicillin N synthase1.21.3.10.579
2bjsACVIsopenicillin N synthase1.21.3.10.527
1odnAPVIsopenicillin N synthase1.21.3.10.479