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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vbdV10Isopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vbdV10Isopenicillin N synthase1.21.3.11.000
2jb4A14Isopenicillin N synthase1.21.3.10.782
2iviACWIsopenicillin N synthase1.21.3.10.775
1bk0ACVIsopenicillin N synthase1.21.3.10.753
1hb3SCVIsopenicillin N synthase1.21.3.10.753
3zoiM2WIsopenicillin N synthase1.21.3.10.752
1hb1OCVIsopenicillin N synthase1.21.3.10.743
2bu9HFVIsopenicillin N synthase1.21.3.10.740
3zkyWT4Isopenicillin N synthase1.21.3.10.708
4bb3KKAIsopenicillin N synthase1.21.3.10.667
1uzwCDHIsopenicillin N synthase1.21.3.10.664
1qjfACSIsopenicillin N synthase1.21.3.10.645
1qiqACCIsopenicillin N synthase1.21.3.10.643
2vbpVB1Isopenicillin N synthase1.21.3.10.622
1w06W05Isopenicillin N synthase1.21.3.10.621
1oc1ASVIsopenicillin N synthase1.21.3.10.616
1obnASVIsopenicillin N synthase1.21.3.10.614
2y60M8FIsopenicillin N synthase1.21.3.10.614
2vcmM11Isopenicillin N synthase1.21.3.10.591
3zkuHCVIsopenicillin N synthase1.21.3.10.581
2wo7ASVIsopenicillin N synthase1.21.3.10.564
1blzACVIsopenicillin N synthase1.21.3.10.559
2y6fM9FIsopenicillin N synthase1.21.3.10.546
2bjsACVIsopenicillin N synthase1.21.3.10.540
1odnAPVIsopenicillin N synthase1.21.3.10.479