Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2v5uFMNFlavodoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2v5uFMNFlavodoxin/1.000
2bf4FMNNADPH--cytochrome P450 reductase/0.505
3qfrFMNNADPH--cytochrome P450 reductase/0.500
1amoFMNNADPH--cytochrome P450 reductase/0.491
3qe2FMNNADPH--cytochrome P450 reductase/0.482
1ja1FMNNADPH--cytochrome P450 reductase/0.481
1ja0FMNNADPH--cytochrome P450 reductase/0.479
3f90FMNFlavodoxin/0.476
3ojxFMNNADPH--cytochrome P450 reductase/0.462
2bn4FMNNADPH--cytochrome P450 reductase/0.459
3eszFMNFlavodoxin/0.456
3f6sFMNFlavodoxin/0.454
4yaoFMNNADPH--cytochrome P450 reductase/0.445
3ziuLSSLeucyl-tRNA synthetase/0.440