Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2v52LABActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2v52LABActin, alpha skeletal muscle/1.000
2v51LABActin, alpha skeletal muscle/0.614
4b1vLABActin, alpha skeletal muscle/0.586
4gy2LARActin, alpha skeletal muscle/0.526
4b1uLABActin, alpha skeletal muscle/0.522
1rdwLARActin, alpha skeletal muscle/0.519
4h03LARActin, alpha skeletal muscle/0.507
3buzLARActin, alpha skeletal muscle/0.482
2q0uLABActin, alpha skeletal muscle/0.480
4h0yLARActin, alpha skeletal muscle/0.477
1ijjLARActin, alpha skeletal muscle/0.471
4h0tLARActin, alpha skeletal muscle/0.465
1rfqLARActin, alpha skeletal muscle/0.464
1sqkLARActin, alpha skeletal muscle/0.463
1k6tXN1Gag-Pol polyprotein3.4.23.160.456
3sjhLARActin, alpha skeletal muscle/0.455